PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G226300.1
Common NameB456_008G226300, LOC105765004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 647aa    MW: 70932.1 Da    PI: 5.3548
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G226300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12473518454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Gorai.008G226300.1 473 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 518
                         799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-5784264IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-14472523No hitNo description
SuperFamilySSF474591.31E-18472539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-19473539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-10473518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16475524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MTDYRFASTM NLWTDDNASV MEAFMSSDLS ALWQPPPQSS ASTSTPAVVA SSAAAAASGA  60
PDLLKSSVAP QSHPSVALFN QETLQQRLQA LIEGAHECWT YAIFWQSSYD YSGPAVLGWG  120
DGYYKGEEDK GKRKLKTSSA VAEQEHRKKV LRELNSLISG STAPTDDAVD EEVTDTEWFF  180
LVSMTQSFVN GGGLPGQALF NSTPVWVVGS ERLASSTCER VRQGQVFGLQ TMVCIPSANG  240
VVELGSTELI TQSSGLMNKV RVLFNFNNGI EAGYLSMCNN IADEGENDPS SLWISDPNSG  300
VEYKESHNNN QNQQIEKSIQ FHDNPSSSSL TENPSSIQQR QSQNFGLNFS DYGFDGSYSV  360
RNGNSSHLFK PESEETLNFG ESKRSGNVVE ENKKKTSPTS RGSHEDGMLS FSSAVVLPSS  420
GMMKSSGGAG DSDNSDIEAS VVKEAECVKP LEPEKKPRKR GRKPANGREE PLNHVEAERQ  480
RREKLNQRFY ALRAVVPNVS KMDKASLLGD AISYINELST KVQDAESEKQ ELQKQLEAMK  540
KELAKKDSSP QNPKTSNHLG NRLIELETEV KVIGWDAMIR IQCKRKNHPA ARLMAALKEL  600
NLDVQHASVT VVNDLMIQQA TVKMGNPFYT QEQLRLALIS KIGSEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-77792674195Transcription factor MYC3
4rqw_B9e-77792674195Transcription factor MYC3
4rs9_A9e-77792674195Transcription factor MYC3
4yz6_A9e-77792674195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454462KKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439320.10.0PREDICTED: transcription factor MYC2-like isoform X1
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A0D2T5380.0A0A0D2T538_G
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]